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Specimen "101" Version "1"

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This Resource , XML or JSON representation, or the full version history.. provenance for this resource
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Generated Narrative

identifier: id: 23234352356

accessionIdentifier: id: X352356

status: available

type: Venous blood specimen

subject: Peter Patient. Generated Summary: Medical record number: 12345 (USUAL); active; Peter James Chalmers (OFFICIAL), Jim , Peter James Windsor (MAIDEN); , Phone: (03) 5555 6473, Phone: (03) 3410 5613, Phone: (03) 5555 8834; gender: male; birthDate: 1974-12-25;

receivedTime: 4 Mar. 2011, 6:03:00 pm

request: Generated Summary: status: completed; intent: order; Diagnostics Procedure; Computed tomography of head

Collections

-CollectorCollected[x]QuantityMethodBodySite
*Generated Summary: id: 23; active; Adam Careful 30 May 2011, 4:15:00 pm6 mLLine, VenousRight median cubital vein

Containers

-IdentifierDescriptionTypeCapacitySpecimenQuantityAdditive[x]
*id: 48736-15394-75465Green Gel tubeVacutainer10 mL6 mL

instance: false

Codes

-
*

note: Specimen is grossly lipemic


{
  "resourceType" : "Specimen",
  "id" : "101",
  "meta" : {
    "versionId" : "1",
    "lastUpdated" : "2021-05-24T10:51:20.969Z",
    "tag" : [
      {
        "system" : "http://terminology.hl7.org/CodeSystem/v3-ActReason",
        "code" : "HTEST",
        "display" : "test health data"
      }
    ]
  },
  "text" : {
    "status" : "generated",
    "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative</b></p><p><b>identifier</b>: id: 23234352356</p><p><b>accessionIdentifier</b>: id: X352356</p><p><b>status</b>: available</p><p><b>type</b>: <span>Venous blood specimen</span></p><p><b>subject</b>: <a>Peter Patient. Generated Summary: Medical record number: 12345 (USUAL); active; Peter James Chalmers (OFFICIAL), Jim , Peter James Windsor (MAIDEN); , Phone: (03) 5555 6473, Phone: (03) 3410 5613, Phone: (03) 5555 8834; gender: male; birthDate: 1974-12-25; </a></p><p><b>receivedTime</b>: 4 Mar. 2011, 6:03:00 pm</p><p><b>request</b>: <a>Generated Summary: status: completed; intent: order; <span>Diagnostics Procedure</span>; <span>Computed tomography of head</span></a></p><h3>Collections</h3><table><tr><td>-</td><td><b>Collector</b></td><td><b>Collected[x]</b></td><td><b>Quantity</b></td><td><b>Method</b></td><td><b>BodySite</b></td></tr><tr><td>*</td><td><a>Generated Summary: id: 23; active; Adam Careful </a></td><td>30 May 2011, 4:15:00 pm</td><td>6 mL</td><td><span>Line, Venous</span></td><td><span>Right median cubital vein</span></td></tr></table><h3>Containers</h3><table><tr><td>-</td><td><b>Identifier</b></td><td><b>Description</b></td><td><b>Type</b></td><td><b>Capacity</b></td><td><b>SpecimenQuantity</b></td><td><b>Additive[x]</b></td></tr><tr><td>*</td><td>id: 48736-15394-75465</td><td>Green Gel tube</td><td><span>Vacutainer</span></td><td>10 mL</td><td>6 mL</td><td><a> </a><blockquote><p><b>instance</b>: false</p><h3>Codes</h3><table><tr><td>-</td></tr><tr><td>*</td></tr></table></blockquote></td></tr></table><p><b>note</b>: Specimen is grossly lipemic</p></div>"
  },
  "contained" : [
    {
      "resourceType" : "Substance",
      "id" : "hep",
      "instance" : false,
      "code" : {
        "concept" : {
          "coding" : [
            {
              "system" : "http://terminology.hl7.org/CodeSystem/v3-EntityCode",
              "code" : "HEPL"
            }
          ]
        }
      }
    }
  ],
  "identifier" : [
    {
      "system" : "http://ehr.acme.org/identifiers/collections",
      "value" : "23234352356"
    }
  ],
  "accessionIdentifier" : {
    "system" : "http://lab.acme.org/specimens/2011",
    "value" : "X352356"
  },
  "status" : "available",
  "type" : {
    "coding" : [
      {
        "system" : "http://snomed.info/sct",
        "code" : "122555007",
        "display" : "Venous blood specimen"
      }
    ]
  },
  "subject" : {
    "reference" : "Patient/example",
    "display" : "Peter Patient"
  },
  "receivedTime" : "2011-03-04T07:03:00Z",
  "request" : [
    {
      "reference" : "ServiceRequest/example"
    }
  ],
  "collection" : {
    "collector" : {
      "reference" : "Practitioner/example"
    },
    "collectedDateTime" : "2011-05-30T06:15:00Z",
    "quantity" : {
      "value" : 6,
      "unit" : "mL"
    },
    "method" : {
      "coding" : [
        {
          "system" : "http://terminology.hl7.org/CodeSystem/v2-0488",
          "code" : "LNV"
        }
      ]
    },
    "bodySite" : {
      "coding" : [
        {
          "system" : "http://snomed.info/sct",
          "code" : "49852007",
          "display" : "Structure of median cubital vein (body structure)"
        }
      ],
      "text" : "Right median cubital vein"
    }
  },
  "container" : [
    {
      "identifier" : [
        {
          "value" : "48736-15394-75465"
        }
      ],
      "description" : "Green Gel tube",
      "type" : {
        "text" : "Vacutainer"
      },
      "capacity" : {
        "value" : 10,
        "unit" : "mL"
      },
      "specimenQuantity" : {
        "value" : 6,
        "unit" : "mL"
      },
      "additiveReference" : {
        "reference" : "#hep"
      }
    }
  ],
  "note" : [
    {
      "text" : "Specimen is grossly lipemic"
    }
  ]
}

Specimen "vma-urine" Version "1"

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Generated Narrative

accessionIdentifier: id: X352356

status: available

type: Urine, Random

subject: Generated Summary: Medical record number: 12345 (USUAL); active; Peter James Chalmers (OFFICIAL), Jim , Peter James Windsor (MAIDEN); , Phone: (03) 5555 6473, Phone: (03) 3410 5613, Phone: (03) 5555 8834; gender: male; birthDate: 1974-12-25;

receivedTime: 18 Aug. 2015, 5:03:00 pm

Collections

-CollectorCollected[x]
*Generated Summary: UZI-nummer: 12345678902 (OFFICIAL), BIG-nummer: 12345678902 (OFFICIAL); active; Luigi Maas(OFFICIAL); Phone: +31715269111; gender: male; birthDate: 1960-06-1218 Aug. 2015, 5:03:00 pm

Processings

-DescriptionProcedureAdditiveTime[x]
*Acidify to pH < 3.0 with 6 N HCl.Acidification6 N HCl18 Aug. 2015, 6:10:00 pm

Containers

-TypeCapacitySpecimenQuantity
*Non-sterile specimen container50 mls10 mls

{
  "resourceType" : "Specimen",
  "id" : "vma-urine",
  "meta" : {
    "versionId" : "1",
    "lastUpdated" : "2021-05-24T10:51:20.875Z",
    "tag" : [
      {
        "system" : "http://terminology.hl7.org/CodeSystem/v3-ActReason",
        "code" : "HTEST",
        "display" : "test health data"
      }
    ]
  },
  "text" : {
    "status" : "generated",
    "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative</b></p><p><b>accessionIdentifier</b>: id: X352356</p><p><b>status</b>: available</p><p><b>type</b>: <span>Urine, Random</span></p><p><b>subject</b>: <a>Generated Summary: Medical record number: 12345 (USUAL); active; Peter James Chalmers (OFFICIAL), Jim , Peter James Windsor (MAIDEN); , Phone: (03) 5555 6473, Phone: (03) 3410 5613, Phone: (03) 5555 8834; gender: male; birthDate: 1974-12-25; </a></p><p><b>receivedTime</b>: 18 Aug. 2015, 5:03:00 pm</p><h3>Collections</h3><table><tr><td>-</td><td><b>Collector</b></td><td><b>Collected[x]</b></td></tr><tr><td>*</td><td><a>Generated Summary: UZI-nummer: 12345678902 (OFFICIAL), BIG-nummer: 12345678902 (OFFICIAL); active; Luigi Maas(OFFICIAL); Phone: +31715269111; gender: male; birthDate: 1960-06-12</a></td><td>18 Aug. 2015, 5:03:00 pm</td></tr></table><h3>Processings</h3><table><tr><td>-</td><td><b>Description</b></td><td><b>Procedure</b></td><td><b>Additive</b></td><td><b>Time[x]</b></td></tr><tr><td>*</td><td>Acidify to pH &lt; 3.0 with 6 N HCl.</td><td><span>Acidification</span></td><td><span>6 N HCl</span></td><td>18 Aug. 2015, 6:10:00 pm</td></tr></table><h3>Containers</h3><table><tr><td>-</td><td><b>Type</b></td><td><b>Capacity</b></td><td><b>SpecimenQuantity</b></td></tr><tr><td>*</td><td><span>Non-sterile specimen container</span></td><td>50 mls</td><td>10 mls</td></tr></table></div>"
  },
  "accessionIdentifier" : {
    "system" : "http://lab.acme.org/specimens/2015",
    "value" : "X352356"
  },
  "status" : "available",
  "type" : {
    "coding" : [
      {
        "system" : "http://terminology.hl7.org/CodeSystem/v2-0487",
        "code" : "RANDU",
        "display" : "Urine, Random"
      }
    ]
  },
  "subject" : {
    "reference" : "Patient/example"
  },
  "receivedTime" : "2015-08-18T07:03:00Z",
  "collection" : {
    "collector" : {
      "reference" : "Practitioner/f202"
    },
    "collectedDateTime" : "2015-08-18T07:03:00Z"
  },
  "processing" : [
    {
      "description" : "Acidify to pH < 3.0 with 6 N HCl.",
      "procedure" : {
        "coding" : [
          {
            "system" : "http://terminology.hl7.org/CodeSystem/v2-0373",
            "code" : "ACID"
          }
        ]
      },
      "additive" : [
        {
          "display" : "6 N HCl"
        }
      ],
      "timeDateTime" : "2015-08-18T08:10:00Z"
    }
  ],
  "container" : [
    {
      "type" : {
        "text" : "Non-sterile specimen container"
      },
      "capacity" : {
        "value" : 50,
        "unit" : "mls"
      },
      "specimenQuantity" : {
        "value" : 10,
        "unit" : "mls"
      }
    }
  ]
}

Specimen "sst" Version "1"

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Updated: by


{
  "resourceType" : "Specimen",
  "id" : "sst",
  "meta" : {
    "versionId" : "1",
    "lastUpdated" : "2021-05-24T10:51:20.814Z",
    "tag" : [
      {
        "system" : "http://terminology.hl7.org/CodeSystem/v3-ActReason",
        "code" : "HTEST",
        "display" : "test health data"
      }
    ]
  },
  "text" : {
    "status" : "generated",
    "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative</b></p><p><b>accessionIdentifier</b>: id: 20150816-00124</p><p><b>type</b>: <span>Serum sample</span></p><p><b>subject</b>: <a>Generated Summary: Medical record number: 123456 (USUAL); active; Duck D Donald (OFFICIAL); gender: other</a></p><p><b>request</b>: <a>Generated Summary: status: active; intent: reflex-order; <span>Free T4</span>; occurrence: 27 Aug. 2015, 12:33:27 pm</a></p><h3>Collections</h3><table><tr><td>-</td><td><b>Collector</b></td><td><b>Collected[x]</b></td></tr><tr><td>*</td><td><a>Generated Summary: UZI-nummer: 12345678902 (OFFICIAL), BIG-nummer: 12345678902 (OFFICIAL); active; Luigi Maas(OFFICIAL); Phone: +31715269111; gender: male; birthDate: 1960-06-12</a></td><td>16 Aug. 2015, 4:40:17 pm</td></tr></table><h3>Containers</h3><table><tr><td>-</td><td><b>Type</b></td></tr><tr><td>*</td><td><span>Serum Separator Tube</span></td></tr></table></div>"
  },
  "accessionIdentifier" : {
    "system" : "http://acme.com/labs/accession-ids",
    "value" : "20150816-00124"
  },
  "type" : {
    "coding" : [
      {
        "system" : "http://snomed.info/sct",
        "code" : "119364003",
        "display" : "Serum sample"
      }
    ]
  },
  "subject" : {
    "reference" : "Patient/pat2"
  },
  "request" : [
    {
      "reference" : "ServiceRequest/ft4"
    }
  ],
  "collection" : {
    "collector" : {
      "reference" : "Practitioner/f202"
    },
    "collectedDateTime" : "2015-08-16T06:40:17Z"
  },
  "container" : [
    {
      "type" : {
        "coding" : [
          {
            "system" : "http://acme.com/labs",
            "code" : "SST",
            "display" : "Serum Separator Tube"
          }
        ]
      }
    }
  ]
}

Specimen "pooled-serum" Version "1"

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Updated: by

Generated Narrative

accessionIdentifier: id: 20171120-1234

type: Pooled serum sample

subject: Generated Summary: id: 20171120-1234; active; type: animal; actual; Porcine; name: Breeding herd; 2500

Collections

-CollectorCollected[x]
*James Herriot, FRCVS2017-11-14

Containers

-Type
*Red Top Blood Collection Tube

note: Pooled serum sample from 30 individuals


{
  "resourceType" : "Specimen",
  "id" : "pooled-serum",
  "meta" : {
    "versionId" : "1",
    "lastUpdated" : "2021-05-24T10:51:20.750Z",
    "tag" : [
      {
        "system" : "http://terminology.hl7.org/CodeSystem/v3-ActReason",
        "code" : "HTEST",
        "display" : "test health data"
      }
    ]
  },
  "text" : {
    "status" : "generated",
    "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative</b></p><p><b>accessionIdentifier</b>: id: 20171120-1234</p><p><b>type</b>: <span>Pooled serum sample</span></p><p><b>subject</b>: <a>Generated Summary: id: 20171120-1234; active; type: animal; actual; <span>Porcine</span>; name: Breeding herd; 2500</a></p><h3>Collections</h3><table><tr><td>-</td><td><b>Collector</b></td><td><b>Collected[x]</b></td></tr><tr><td>*</td><td><span>James Herriot, FRCVS</span></td><td>2017-11-14</td></tr></table><h3>Containers</h3><table><tr><td>-</td><td><b>Type</b></td></tr><tr><td>*</td><td><span>Red Top Blood Collection Tube</span></td></tr></table><p><b>note</b>: Pooled serum sample from 30 individuals</p></div>"
  },
  "accessionIdentifier" : {
    "system" : "https://vetmed.iastate.edu/vdl",
    "value" : "20171120-1234"
  },
  "type" : {
    "coding" : [
      {
        "system" : "https://vetmed.iastate.edu/vdl",
        "code" : "Serum sample, pooled",
        "display" : "Serum sample, pooled"
      }
    ],
    "text" : "Pooled serum sample"
  },
  "subject" : {
    "reference" : "Group/herd1"
  },
  "collection" : {
    "collector" : {
      "display" : "James Herriot, FRCVS"
    },
    "collectedDateTime" : "2017-11-14"
  },
  "container" : [
    {
      "type" : {
        "coding" : [
          {
            "system" : "https://vetmed.iastate.edu/vdl",
            "code" : "RTT",
            "display" : "Red Top Tube"
          }
        ],
        "text" : "Red Top Blood Collection Tube"
      }
    }
  ],
  "note" : [
    {
      "text" : "Pooled serum sample from 30 individuals"
    }
  ]
}

Specimen "isolate" Version "1"

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This Resource , XML or JSON representation, or the full version history.. provenance for this resource
Updated: by

Generated Narrative

accessionIdentifier: id: X352356-ISO1

status: available

type: Bacterial isolate specimen

subject: Generated Summary: Medical record number: 12345 (USUAL); active; Peter James Chalmers (OFFICIAL), Jim , Peter James Windsor (MAIDEN); , Phone: (03) 5555 6473, Phone: (03) 3410 5613, Phone: (03) 5555 8834; gender: male; birthDate: 1974-12-25;

receivedTime: 18 Aug. 2015, 5:03:00 pm

parent:

accessionIdentifier: id: X352356

status: unavailable

type: Stool specimen

subject: Generated Summary: Medical record number: 12345 (USUAL); active; Peter James Chalmers (OFFICIAL), Jim , Peter James Windsor (MAIDEN); , Phone: (03) 5555 6473, Phone: (03) 3410 5613, Phone: (03) 5555 8834; gender: male; birthDate: 1974-12-25;

receivedTime: 16 Aug. 2015, 5:03:00 pm

Collections

-CollectorCollected[x]Method
*Patient16 Aug. 2011, 4:15:00 pmLine, Venous

Collections

-CollectorCollected[x]Method
*Generated Summary: UZI-nummer: 12345678902 (OFFICIAL), BIG-nummer: 12345678902 (OFFICIAL); active; Luigi Maas(OFFICIAL); Phone: +31715269111; gender: male; birthDate: 1960-06-1216 Aug. 2015, 5:03:00 pmPlates, Blood Agar

note: Patient dropped off specimen


{
  "resourceType" : "Specimen",
  "id" : "isolate",
  "meta" : {
    "versionId" : "1",
    "lastUpdated" : "2021-05-24T10:51:20.657Z",
    "tag" : [
      {
        "system" : "http://terminology.hl7.org/CodeSystem/v3-ActReason",
        "code" : "HTEST",
        "display" : "test health data"
      }
    ]
  },
  "text" : {
    "status" : "generated",
    "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative</b></p><p><b>accessionIdentifier</b>: id: X352356-ISO1</p><p><b>status</b>: available</p><p><b>type</b>: <span>Bacterial isolate specimen</span></p><p><b>subject</b>: <a>Generated Summary: Medical record number: 12345 (USUAL); active; Peter James Chalmers (OFFICIAL), Jim , Peter James Windsor (MAIDEN); , Phone: (03) 5555 6473, Phone: (03) 3410 5613, Phone: (03) 5555 8834; gender: male; birthDate: 1974-12-25; </a></p><p><b>receivedTime</b>: 18 Aug. 2015, 5:03:00 pm</p><p><b>parent</b>: <a> </a></p><blockquote><p><b>accessionIdentifier</b>: id: X352356</p><p><b>status</b>: unavailable</p><p><b>type</b>: <span>Stool specimen</span></p><p><b>subject</b>: <a>Generated Summary: Medical record number: 12345 (USUAL); active; Peter James Chalmers (OFFICIAL), Jim , Peter James Windsor (MAIDEN); , Phone: (03) 5555 6473, Phone: (03) 3410 5613, Phone: (03) 5555 8834; gender: male; birthDate: 1974-12-25; </a></p><p><b>receivedTime</b>: 16 Aug. 2015, 5:03:00 pm</p><h3>Collections</h3><table><tr><td>-</td><td><b>Collector</b></td><td><b>Collected[x]</b></td><td><b>Method</b></td></tr><tr><td>*</td><td><span>Patient</span></td><td>16 Aug. 2011, 4:15:00 pm</td><td><span>Line, Venous</span></td></tr></table></blockquote><h3>Collections</h3><table><tr><td>-</td><td><b>Collector</b></td><td><b>Collected[x]</b></td><td><b>Method</b></td></tr><tr><td>*</td><td><a>Generated Summary: UZI-nummer: 12345678902 (OFFICIAL), BIG-nummer: 12345678902 (OFFICIAL); active; Luigi Maas(OFFICIAL); Phone: +31715269111; gender: male; birthDate: 1960-06-12</a></td><td>16 Aug. 2015, 5:03:00 pm</td><td><span>Plates, Blood Agar</span></td></tr></table><p><b>note</b>: Patient dropped off specimen</p></div>"
  },
  "contained" : [
    {
      "resourceType" : "Specimen",
      "id" : "stool",
      "accessionIdentifier" : {
        "system" : "http://lab.acme.org/specimens/2015",
        "value" : "X352356"
      },
      "status" : "unavailable",
      "type" : {
        "coding" : [
          {
            "system" : "http://snomed.info/sct",
            "code" : "119339001",
            "display" : "Stool specimen"
          }
        ]
      },
      "subject" : {
        "reference" : "Patient/example"
      },
      "receivedTime" : "2015-08-16T07:03:00Z",
      "collection" : {
        "collector" : {
          "display" : "Patient"
        },
        "collectedDateTime" : "2011-08-16T06:15:00Z",
        "method" : {
          "coding" : [
            {
              "system" : "http://terminology.hl7.org/CodeSystem/v2-0488",
              "code" : "LNV"
            }
          ]
        }
      }
    }
  ],
  "accessionIdentifier" : {
    "system" : "http://lab.acme.org/specimens/2011",
    "value" : "X352356-ISO1"
  },
  "status" : "available",
  "type" : {
    "coding" : [
      {
        "system" : "http://snomed.info/sct",
        "code" : "429951000124103",
        "display" : "Bacterial isolate specimen"
      }
    ]
  },
  "subject" : {
    "reference" : "Patient/example"
  },
  "receivedTime" : "2015-08-18T07:03:00Z",
  "parent" : [
    {
      "reference" : "#stool"
    }
  ],
  "collection" : {
    "collector" : {
      "reference" : "Practitioner/f202"
    },
    "collectedDateTime" : "2015-08-16T07:03:00Z",
    "method" : {
      "coding" : [
        {
          "system" : "http://terminology.hl7.org/CodeSystem/v2-0488",
          "code" : "BAP"
        }
      ]
    }
  },
  "note" : [
    {
      "text" : "Patient dropped off specimen"
    }
  ]
}