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MolecularSequence:
_content Search on the entire content of the resource
_filter This is the formal declaration for the _filter parameter, documented at [http://hl7.org/fhir/search_filter.html](http://hl7.org/fhir/search_filter.html)
_id Logical id of this artifact
_lastUpdated When the resource version last changed on given date (yyyy-mm-dd)
(before) (before given date)
(after) (after given date)
_profile Profiles this resource claims to conform to
_query A custom search profile that describes a specific defined query operation
_security Security Labels applied to this resource
_source Identifies where the resource comes from
_tag Tags applied to this resource
_text Search on the narrative of the resource
chromosome Chromosome number of the reference sequence
chromosome-variant-coordinate Search parameter by chromosome and variant coordinate. This will refer to part of a locus or part of a gene where search region will be represented in 1-based system. Since the coordinateSystem can either be 0-based or 1-based, this search query will include the result of both coordinateSystem that contains the equivalent segment of the gene or whole genome sequence. For example, a search for sequence can be represented as `chromosome-variant-coordinate=1$lt345$gt123`, this means it will search for the MolecularSequence resource with variants on chromosome 1 and with position >123 and <345, where in 1-based system resource, all strings within region 1:124-344 will be revealed, while in 0-based system resource, all strings within region 1:123-344 will be revealed. You may want to check detail about 0-based v.s. 1-based above.
chromosome-window-coordinate Search parameter by chromosome and window. This will refer to part of a locus or part of a gene where search region will be represented in 1-based system. Since the coordinateSystem can either be 0-based or 1-based, this search query will include the result of both coordinateSystem that contains the equivalent segment of the gene or whole genome sequence. For example, a search for sequence can be represented as `chromosome-window-coordinate=1$lt345$gt123`, this means it will search for the MolecularSequence resource with a window on chromosome 1 and with position >123 and <345, where in 1-based system resource, all strings within region 1:124-344 will be revealed, while in 0-based system resource, all strings within region 1:123-344 will be revealed. You may want to check detail about 0-based v.s. 1-based above.
identifier The unique identity for a particular sequence
referenceseqid Reference Sequence of the sequence
referenceseqid-variant-coordinate Search parameter by reference sequence and variant coordinate. This will refer to part of a locus or part of a gene where search region will be represented in 1-based system. Since the coordinateSystem can either be 0-based or 1-based, this search query will include the result of both coordinateSystem that contains the equivalent segment of the gene or whole genome sequence. For example, a search for sequence can be represented as `referenceSeqId-variant-coordinate=NC_000001.11$lt345$gt123`, this means it will search for the MolecularSequence resource with variants on NC_000001.11 and with position >123 and <345, where in 1-based system resource, all strings within region NC_000001.11:124-344 will be revealed, while in 0-based system resource, all strings within region NC_000001.11:123-344 will be revealed. You may want to check detail about 0-based v.s. 1-based above.
referenceseqid-window-coordinate Search parameter by reference sequence and window. This will refer to part of a locus or part of a gene where search region will be represented in 1-based system. Since the coordinateSystem can either be 0-based or 1-based, this search query will include the result of both coordinateSystem that contains the equivalent segment of the gene or whole genome sequence. For example, a search for sequence can be represented as `referenceSeqId-window-coordinate=NC_000001.11$lt345$gt123`, this means it will search for the MolecularSequence resource with a window on NC_000001.11 and with position >123 and <345, where in 1-based system resource, all strings within region NC_000001.11:124-344 will be revealed, while in 0-based system resource, all strings within region NC_000001.11:123-344 will be revealed. You may want to check detail about 0-based v.s. 1-based above.
type Amino Acid Sequence/ DNA Sequence / RNA Sequence
variant-end End position (0-based exclusive, which menas the acid at this position will not be included, 1-based inclusive, which means the acid at this position will be included) of the variant.
variant-start Start position (0-based inclusive, 1-based inclusive, that means the nucleic acid or amino acid at this position will be included) of the variant.
window-end End position (0-based exclusive, which menas the acid at this position will not be included, 1-based inclusive, which means the acid at this position will be included) of the reference sequence.
window-start Start position (0-based inclusive, 1-based inclusive, that means the nucleic acid or amino acid at this position will be included) of the reference sequence.
patient (Patient):
_content Search on the entire content of the resource
_filter This is the formal declaration for the _filter parameter, documented at [http://hl7.org/fhir/search_filter.html](http://hl7.org/fhir/search_filter.html)
_id Logical id of this artifact
_lastUpdated (exact) When the resource version last changed
(before) (before given date)
(after) (after given date)
_profile Profiles this resource claims to conform to
_query A custom search profile that describes a specific defined query operation
_security Security Labels applied to this resource
_source Identifies where the resource comes from
_tag Tags applied to this resource
_text Search on the narrative of the resource
active Whether the patient record is active
address A server defined search that may match any of the string fields in the Address, including line, city, district, state, country, postalCode, and/or text
address-city A city specified in an address
address-country A country specified in an address
address-postalcode A postalCode specified in an address
address-state A state specified in an address
address-use A use code specified in an address
age Searches for patients based on age as calculated based on current date and date of birth. Deceased patients are excluded from the search.
birthOrderBoolean Search based on whether a patient was part of a multiple birth or not.
birthdate (exact) The patient's date of birth
(before) (before given date)
(after) (after given date)
death-date (exact) The date of death has been provided and satisfies this search value
(before) (before given date)
(after) (after given date)
deceased This patient has been marked as deceased, or as a death date entered
email A value in an email contact
family A portion of the family name of the patient
gender Gender of the patient
general-practitioner Patient's nominated general practitioner, not the organization that manages the record
given A portion of the given name of the patient
identifier A patient identifier
language Language code (irrespective of use value)
link All patients linked to the given patient
mothersMaidenName Search based on patient's mother's maiden name
name A server defined search that may match any of the string fields in the HumanName, including family, give, prefix, suffix, suffix, and/or text
organization The organization that is the custodian of the patient record
part-agree Search by url for a participation agreement, which is stored in a DocumentReference
phone A value in a phone contact
phonetic A portion of either family or given name using some kind of phonetic matching algorithm
telecom The value in any kind of telecom details of the patient
Text Search for these words in the narrative. See [[http://technet.microsoft.com/en-us/library/ms142571.aspx]] for details
First Record (empty = start at the start)
# Records to return (default value, which is also max allowed, is 1000. Values of <2 not allowed)
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Summary: Return just a summary for each resource (if applicable)